Jens Allmer
Data curation
- experimental/fasta/00010.complete.tab — data-curation IoSCore credit ledger
- experimental/fasta/00010.fasta — data-curation IoSCore credit ledger
- experimental/fasta/annot_00010.fasta — data-curation IoSCore credit ledger
- experimental/fasta/filtered.fasta — data-curation IoSCore credit ledger
- experimental/fasta/headers.txt — data-curation IoSCore credit ledger
- experimental/fasta/map_00010.tab — data-curation IoSCore credit ledger
- experimental/fasta/mapping.txt — data-curation IoSCore credit ledger
- experimental/fasta/unirefsample.fasta — data-curation IoSCore credit ledger
- experimental/fasta/unirefsample_renamed.fasta — data-curation IoSCore credit ledger
- experimental/fastq/interleaved.fastq — data-curation IoSCore credit ledger
- experimental/msms/1000spectra.mgf — data-curation IoSCore credit ledger
- experimental/sam/SAMsample.sam — data-curation IoSCore credit ledger
- experimental/sam/counts.csv — data-curation IoSCore credit ledger
- external/geo/GDS3257.soft.gz — data-curation IoSCore credit ledger
- external/go/HUMAN-uniprot.gaf.gz — data-curation IoSCore credit ledger
- external/sam/res.sam — data-curation IoSCore credit ledger
- external/vocabulary/EDAM_1.25.csv — data-curation IoSCore credit ledger
- synthetic/bam/test.bgzf — data-curation IoSCore credit ledger
- synthetic/fasta/bad.fasta — data-curation IoSCore credit ledger
- synthetic/fasta/prot.fasta — data-curation IoSCore credit ledger
- synthetic/fasta/test.fasta — data-curation IoSCore credit ledger
- synthetic/sam/example.sam — data-curation IoSCore credit ledger
- synthetic/sam/unsorted.sam — data-curation IoSCore credit ledger
- synthetic/sequence/exact-match-cases.json — data-curation IoSCore credit ledger
- synthetic/taxonomy/names.dmp — data-curation IoSCore credit ledger
- synthetic/taxonomy/nodes.dmp — data-curation IoSCore credit ledger
Software
- BAMDecoder — implementation IoSCore credit ledger
- BAMEncoder — implementation IoSCore credit ledger
- BAMIndexByCoord — implementation IoSCore credit ledger
- BAMIndexByName — implementation IoSCore credit ledger
- BAMStreamSorter — implementation IoSCore credit ledger
- BGZFBlockBytes — implementation IoSCore credit ledger
- BGZFReader — implementation IoSCore credit ledger
- BGZFWriter — implementation IoSCore credit ledger
- BackboneIonStream — implementation IoSCore credit ledger
- BioProjectSelector — implementation IoSCore credit ledger
- BoyerMooreSearch — implementation IoSCore credit ledger
- BrowserFileSink — implementation IoSCore credit ledger
- BrowserFileSource — implementation IoSCore credit ledger
- ChargeStateStream — implementation IoSCore credit ledger
- ENADownloader — implementation IoSCore credit ledger
- ENASearch — implementation IoSCore credit ledger
- ExactMatch — implementation IoSCore credit ledger
- ExpressionMatrix — implementation IoSCore credit ledger
- FASTAAnnotate — implementation IoSCore credit ledger
- FASTADefLineFilter — implementation IoSCore credit ledger
- FASTAElementStream — implementation IoSCore credit ledger
- FASTAIndex — implementation IoSCore credit ledger
- FASTAKeyWordFilter — implementation IoSCore credit ledger
- FASTALenFilter — implementation IoSCore credit ledger
- FASTAReader — implementation IoSCore credit ledger
- FASTARename — implementation IoSCore credit ledger
- FASTASeqType — implementation IoSCore credit ledger
- FASTASplitter — implementation IoSCore credit ledger
- FASTAStatistics — implementation IoSCore credit ledger
- FASTATaxFilter — implementation IoSCore credit ledger
- FASTAWriter — implementation IoSCore credit ledger
- FASTAkmers — implementation IoSCore credit ledger
- FASTQElementStream — implementation IoSCore credit ledger
- FASTQReader — implementation IoSCore credit ledger
- FASTQWriter — implementation IoSCore credit ledger
- FigureArtefact — implementation IoSCore credit ledger
- FileSink — implementation IoSCore credit ledger
- FileSource — implementation IoSCore credit ledger
- FinalizeSpectrumStream — implementation IoSCore credit ledger
- GDSParser — implementation IoSCore credit ledger
- GEODataSetDownloader — implementation IoSCore credit ledger
- GroupIntersect — implementation IoSCore credit ledger
- GroupModel — implementation IoSCore credit ledger
- GroupPreScore — implementation IoSCore credit ledger
- GroupReader — implementation IoSCore credit ledger
- GroupScore — implementation IoSCore credit ledger
- GroupSizeFilter — implementation IoSCore credit ledger
- Gunzip — implementation IoSCore credit ledger
- ImageArtefact — implementation IoSCore credit ledger
- ImmoniumIonStream — implementation IoSCore credit ledger
- IndexAggregator — implementation IoSCore credit ledger
- IntensityModelStream — implementation IoSCore credit ledger
- InternalFragmentStream — implementation IoSCore credit ledger
- JSONLinesReader — implementation IoSCore credit ledger
- JSONLinesWriter — implementation IoSCore credit ledger
- KMERWriter — implementation IoSCore credit ledger
- KmerAggregator — implementation IoSCore credit ledger
- LineJoiner — implementation IoSCore credit ledger
- LineSplitter — implementation IoSCore credit ledger
- MCCVEvaluation — implementation IoSCore credit ledger
- MacrocycleIonStream — implementation IoSCore credit ledger
- MappingIndex — implementation IoSCore credit ledger
- NCBIEntrezSearch — implementation IoSCore credit ledger
- NeutralLossStream — implementation IoSCore credit ledger
- NumberArtefact — implementation IoSCore credit ledger
- ObjectInspector — implementation IoSCore credit ledger
- PeptideToSpectrumStream — implementation IoSCore credit ledger
- PrecursorIonStream — implementation IoSCore credit ledger
- RenameMapWriter — implementation IoSCore credit ledger
- SAMCounter — implementation IoSCore credit ledger
- SAMFlagFilter — implementation IoSCore credit ledger
- SAMIndexByCoord — implementation IoSCore credit ledger
- SAMIndexByName — implementation IoSCore credit ledger
- SAMReader — implementation IoSCore credit ledger
- SAMStreamSorter — implementation IoSCore credit ledger
- SAMUnmappedFilter — implementation IoSCore credit ledger
- SequenceLengths — implementation IoSCore credit ledger
- SixFrameTranslatorStream — implementation IoSCore credit ledger
- SpectrumToPeaks — implementation IoSCore credit ledger
- SuffixArrayIndex — implementation IoSCore credit ledger
- SuffixArraySearch — implementation IoSCore credit ledger
- TableArtefact — implementation IoSCore credit ledger
- TableReader — implementation IoSCore credit ledger
- TableWriter — implementation IoSCore credit ledger
- TaxonomyDumpReader — implementation IoSCore credit ledger
- TaxonomyIndex — implementation IoSCore credit ledger
- TheoreticalSpectrumStream — implementation IoSCore credit ledger
- ToRows — implementation IoSCore credit ledger
- UniqueKmerWriter — implementation IoSCore credit ledger
- BAMInflater — implementation IoSCore credit ledger
- BAMToSAM — implementation IoSCore credit ledger
- SAMToBAM — implementation IoSCore credit ledger
- TheoreticalSpectrumChain — implementation IoSCore credit ledger
Writing – original draft
- Length filter: Keeps FASTA records whose sequence length lies within [minLen, maxLen] — writing articles
- Sequence lengths of the 00010 transcript set — writing articles
- FASTA statistics of the 00010 transcript set — writing articles