The 00010 transcript set (experimental/fasta/00010.fasta) holds ten de novo-assembled transcripts from a plant transcriptome assembly. This article reports their lengths; the table and the figure below come from one run of the workflow fasta-lengths-report, and each caption links to the record of that run.

1 Lengths

The transcripts are between 610 and 1,570 nucleotides long, with a median of 912.5 and a mean of 961.8 nucleotides.

headerlength
pdi2001denovo1,124
pdi2002denovo610
pdi2003denovo912
pdi2004denovo1,570
pdi2005denovo836
pdi2006denovo750
pdi2007denovo1,198
pdi2008denovo1,090
pdi2009denovo615
pdi2010denovo913
Table 1. Sequence lengths Length of every sequence in the input. provenance open workflow

2 Distribution

Most transcripts fall between 600 and 1,200 nucleotides; a single transcript (pdi2004denovo) is longer than 1,400.

Length distribution [610, 706): 2 [706, 802): 1 [802, 898): 1 [898, 994): 2 [994, 1090): 0 [1090, 1186): 2 [1186, 1282): 1 [1282, 1378): 0 [1378, 1474): 0 [1474, 1570]: 1 0 1 2 600 800 1000 1200 1400 1600 length count
Figure 1. Length distribution provenance open workflow

3 Reproducing

Every embed names the workflow document, the dataset and the endpoint. Re-running the workflow on the same data gives the same content hash, which is how a reader verifies a figure.